References for: hasCommentText

Full identifier: https://w3id.org/linkflows/reviews/hasCommentText

Nanopublication Part Subject Predicate Object Published By Published On
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
has the comment text
Tobias Kuhn
2023-08-16T11:04:32.221Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
This is just a test with a long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long comment.
Tobias Kuhn
2023-08-16T10:46:24.119Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
has the comment text
Tobias Kuhn
2023-08-16T10:41:01.767Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I agree that the object 'ERAD pathway' is not the appropiate. I addressed this minting a new class 'dysfunction of ERAD pathway' which is more accurate.
Núria Queralt Rosinach
2021-12-08T21:32:36.553Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for your suggestion, which was addressed.
Cristina-Iulia Bucur
2021-11-17T19:50:51.725Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you.
Cristina-Iulia Bucur
2021-11-17T19:45:57.799Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you.
Cristina-Iulia Bucur
2021-11-17T19:45:21.231Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you.
Cristina-Iulia Bucur
2021-11-17T19:44:46.412Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you.
Cristina-Iulia Bucur
2021-11-17T19:44:43.500Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
In another review comment (http://purl.org/np/RALWxVELKuqrkcO9ud2eXr0E2-ot5bl-0NpOIQi1ktrgI) it is specified that this naming is ok.
Cristina-Iulia Bucur
2021-11-17T19:44:11.450Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
In another review comment (http://purl.org/np/RALWxVELKuqrkcO9ud2eXr0E2-ot5bl-0NpOIQi1ktrgI) it is specified that this naming is ok.
Cristina-Iulia Bucur
2021-11-17T19:43:28.590Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
In another review comment (http://purl.org/np/RALWxVELKuqrkcO9ud2eXr0E2-ot5bl-0NpOIQi1ktrgI) it is specified that this naming is ok.
Cristina-Iulia Bucur
2021-11-17T19:41:33.173Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for your suggestion, which was addressed.
Cristina-Iulia Bucur
2021-11-17T19:37:00.187Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for your suggestion, which was addressed.
Cristina-Iulia Bucur
2021-11-17T19:35:59.839Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for your suggestion, which was addressed.
Cristina-Iulia Bucur
2021-11-17T19:29:32.702Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
updated to reflect ecm binding as a property of the cancer cell
Russell Bainer
2021-11-12T17:22:44.878Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
agreed. nothing to change
Michel Dumontier
2021-11-08T08:13:33.496Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
no change required
Michel Dumontier
2021-11-08T08:12:56.653Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Changed according to suggestion.
Friederike Ehrhart
2021-11-05T09:25:19.129Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Changed according to suggestion.
Friederike Ehrhart
2021-11-05T09:24:11.073Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Changed according to suggestion.
Friederike Ehrhart
2021-11-05T09:23:43.326Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Replaced by new class.
Friederike Ehrhart
2021-11-05T09:22:32.384Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Changed according to suggestion.
Friederike Ehrhart
2021-11-05T09:20:30.590Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you.
Cristina-Iulia Bucur
2021-11-04T08:29:43.987Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for your suggestion which has been implemented.
Cristina-Iulia Bucur
2021-11-04T08:29:13.197Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for the suggestion which was implemented.
Cristina-Iulia Bucur
2021-11-04T08:27:07.342Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for the suggestion which was implemented.
Cristina-Iulia Bucur
2021-11-04T08:26:28.261Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for your suggestion which has been implemented.
Cristina-Iulia Bucur
2021-11-04T08:25:41.076Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I have updated the class to refer to more appropriate wikidata class
Russell Bainer
2021-10-29T16:36:01.048Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The qualifier should be "frequently" instead of "generally".
Cristina-Iulia Bucur
2021-10-29T11:49:51.222Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The provenance of this nanopublication should be a FormalizationActivity and all the fields should be filled in in an appropriate manner: the link to the article, formalization author orcid, the exact quote from the article that contains the scientific claim.
Cristina-Iulia Bucur
2021-10-29T11:47:59.735Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
no modification requested
Valentin GROUÈS
2021-10-29T08:40:10.473Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
no modification requested
Valentin GROUÈS
2021-10-29T08:39:51.998Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
should be fixed hopefully. not sure as it's not clear how the problem appeared in the first place.
Valentin GROUÈS
2021-10-29T08:38:12.684Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
should be fixed hopefully. not sure as it's not clear how the problem appeared in the first place.
Valentin GROUÈS
2021-10-29T08:37:55.322Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
no modification requested
Valentin GROUÈS
2021-10-29T08:36:54.409Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for your review!
Mariya Dimitrova
2021-10-28T07:36:18.367Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you.
Mariya Dimitrova
2021-10-28T06:36:54.931Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thanks for the positive review on the class definition.
Mariya Dimitrova
2021-10-28T06:09:12.750Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thanks for the positive review on the class definition.
Mariya Dimitrova
2021-10-28T06:08:32.658Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thanks for the positive review on the class definition.
Mariya Dimitrova
2021-10-28T06:07:55.755Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thanks for the positive review on the class definition.
Mariya Dimitrova
2021-10-28T06:06:52.526Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
no action needed
Amelia Joslin
2021-10-27T17:27:40.293Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
changed to the updated format where AND was replaced with and
Amelia Joslin
2021-10-27T17:27:16.652Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
no action needed
Amelia Joslin
2021-10-27T17:26:36.079Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
the article link was updated as suggested
Amelia Joslin
2021-10-27T17:26:09.920Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
An exact quote from the paper was added
Amelia Joslin
2021-10-27T17:23:00.301Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
no action needed
Amelia Joslin
2021-10-27T16:51:59.884Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
no action needed
Amelia Joslin
2021-10-27T16:51:36.813Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I agree that this can be confusing. In response to a formalization review comment (3), I added a new class "Digital humanities research"which is a subclass of the resource "research" in wikidata and related to the resource "digital humanities" in wikidata.
Victor de Boer
2021-10-26T12:24:11.304Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I agree that this can be confusing. In response to a formalization review comment (3), I added a new class "Digital humanities research"which is a subclass of the resource "research" in wikidata and related to the resource "digital humanities" in wikidata.
Victor de Boer
2021-10-26T12:24:01.835Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thanks for the positive review on the class definition.
Victor de Boer
2021-10-26T11:30:22.594Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thanks! m.
Michel Dumontier
2021-10-25T14:22:30.526Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thanks! m.
Michel Dumontier
2021-10-25T14:21:51.320Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thanks, I updated the object class to http://purl.org/np/RAiUYY1dbEDbcsscapEmbMMHsgJmjEJ1yUoNsxZIH1r90#transcription-of-stmn2
B. Nolan Nichols III
2021-10-20T18:19:26.478Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thanks for the feedback
Margherita Martorana
2021-10-20T10:05:35.310Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thanks for the feedback
Margherita Martorana
2021-10-20T10:05:15.175Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thanks for the feedback
Margherita Martorana
2021-10-20T10:04:54.072Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thanks for the feedback
Margherita Martorana
2021-10-20T10:03:47.239Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The content of this formalization looks good.
Davide Ceolin
2021-10-19T18:47:43.134Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I do have to agree. However, I changed it to affects instead of causes since it is a negation and leaves the option open to find a positive correlation in the future.
Ricardo Usbeck
2021-10-19T12:29:57.504Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The relation subClassOf was replaced with skos:related as it matches better the intended meaning. The new class is now related to both - the neocortex and size - classes.
Ricardo Usbeck
2021-10-19T12:16:43.366Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The relation subClassOf was replaced with skos:related as it matches better the intended meaning. The new class is now related to both - the neocortex and size - classes.
Ricardo Usbeck
2021-10-19T12:15:50.675Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Something small: I would start the scientific claim with an upper case and end it with a period.
Cristina-Iulia Bucur
2021-10-14T09:54:00.905Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
This looks like a very good formalization to me.
Tobias Kuhn
2021-10-14T08:47:57.503Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I am wondering whether the "never causes" is a bit too strong a relation, also given the natural language sentence. "Never affects" might be more precise than "never causes". (This is also a stronger statement, more likely to be wrong, but that's not necessarily a bad thing.)
Tobias Kuhn
2021-10-14T08:42:32.604Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
This looks like a very good formalization to me.
Tobias Kuhn
2021-10-14T08:29:23.662Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
With a protein class in the object position and a gene in the context, this raises for me the question what it means for a protein to be in the context of a gene. Maybe a class like 'presence of TAR DNA binding protein' in object position might make it clearer? But I am not sure...
Tobias Kuhn
2021-10-14T08:27:07.167Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
This looks like a good formalization to me.
Tobias Kuhn
2021-10-14T07:37:51.087Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The provenance part should use the template 'generated from a formalization activity'.
Tobias Kuhn
2021-10-14T07:30:30.183Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The provenance part should use the template 'generated from a formalization activity'.
Tobias Kuhn
2021-10-14T07:18:51.277Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
You are now stating that the given deficiency is caused by the ERAD pathway, which doesn't sound right. I suppose it should be something like: it is caused by the dysfunction of the ERAD pathway. So, it would mean to mint a new class 'dysfunction of ERAD pathway' and then use this class in object position.
Tobias Kuhn
2021-10-14T07:14:08.481Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The provenance should use the 'Generated by a formalization activity' template.
Tobias Kuhn
2021-10-14T07:05:51.453Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I couldn't find that exact quote from the original paper. It seems that this is a paraphrase whereas it should be the verbatim quote.
Tobias Kuhn
2021-10-12T14:16:05.597Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I believe the chosen qualifier here should be "generally".
Cristina-Iulia Bucur
2021-10-11T07:42:46.176Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I believe the correct qualifier here would be "generally".
Cristina-Iulia Bucur
2021-10-11T07:26:56.193Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The class definition and declaration seems good.
Cristina-Iulia Bucur
2021-10-07T00:20:13.229Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Good class definition and declaration.
Cristina-Iulia Bucur
2021-10-07T00:04:02.170Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I think a skos:related class can be added here. It can be either "pharmacogenomics " (https://www.wikidata.org/wiki/Q1152227) or "clopidogrel" (https://www.wikidata.org/wiki/Q410237).
Cristina-Iulia Bucur
2021-10-06T23:59:04.849Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I think a skos:related class can be added here. It can be either "pharmacogenomics " (https://www.wikidata.org/wiki/Q1152227) or "clopidogrel" (https://www.wikidata.org/wiki/Q410237).
Cristina-Iulia Bucur
2021-10-06T23:55:54.332Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The description of the class seems ok.
Cristina-Iulia Bucur
2021-10-06T22:56:44.353Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The class creation and also the related term in Wikidata seem correct.
Cristina-Iulia Bucur
2021-10-06T22:21:27.601Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I believe the formalization structure is good, reflecting almost all the details of the scientific claim. If the missing details about the "autosomal recessive disorder" were to be included, this would make the formalization complete in my view.
Cristina-Iulia Bucur
2021-10-06T21:59:52.304Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The modelling of the formalization reflects very well the scientific claim.
Cristina-Iulia Bucur
2021-10-06T19:53:22.786Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The modelling of the scientific claim (if we assume the claim is rephrased in an atomic way) seems correct.
Cristina-Iulia Bucur
2021-10-06T19:52:18.956Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The modelling of the formalization seems to reflect well the content of the scientific claim.
Cristina-Iulia Bucur
2021-10-06T19:46:04.316Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Maybe the scientific claim should be rephrased a bit to reflect the growth effect more, instead of just using "mechanically drives".
Cristina-Iulia Bucur
2021-10-06T19:42:36.295Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The modelling of the formalization is good.
Cristina-Iulia Bucur
2021-10-06T19:39:49.858Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The scientific claim "mutations in STX1B are associated with epilepsy" contains an unknown or wrong character for the "STX1B" subunit. This should be corrected.
Cristina-Iulia Bucur
2021-10-06T19:29:38.356Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
A small thing: to start the sentence containing the scientific claim with an uppercase letter.
Cristina-Iulia Bucur
2021-10-06T19:26:42.403Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I have some doubts about the context class used, as I am not sure if, from a biological point of view, the interpretation of the formalization makes sense.
Cristina-Iulia Bucur
2021-10-05T22:55:02.611Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Maybe the use of a causal relation like "contributes to" can also be used here.
Cristina-Iulia Bucur
2021-10-05T14:17:32.549Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The provenance, which is a "FormalizationActivity" should also include the actual quote from the article from which the scientific claim was derived. As such, the "sub:quote prov:value <quote_from_article_from_which_the_scientific_claim_was_derived>" and "prov:wasQuotedFrom <http://doi.org/10.1038/ng.3130>" should be added.
Cristina-Iulia Bucur
2021-10-05T13:55:56.487Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The original quote from the article that contains the scientific claim that is formalized should be written here, instead of the sentence with the scientific claim.
Cristina-Iulia Bucur
2021-10-04T16:21:26.003Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
It would be good to add skos:relatedMatch references to identifiers for the genes IRX3 and IRX5.
Tobias Kuhn
2021-08-11T13:36:09.363Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
looks good!
Michel Dumontier
2021-08-03T09:27:50.346Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I learned a lot from this formalization. In particular, about nesting object classes.
Ricardo Usbeck
2021-07-21T09:43:55.354Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The content is very good
Margherita Martorana
2021-07-14T13:17:08.822Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
There is no link to the original publication
Margherita Martorana
2021-07-14T13:13:10.405Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Maybe changing the "_" into a "-" for newly generated classes
Margherita Martorana
2021-07-14T11:47:10.124Z